You left records in table and reset autonumber seed? I expect this will not go well. I just tested and Access attempts to create next ID in sequence and if it is already in table, triggers 'duplicate values' error.
However, next time you run Compact & Repair, Access should start numbering from max ID in table. There will be a gap for deleted ID's. So unless you plan to fill in 1000 records before next C&R, you will get gaps anyway. Gaps should be irrelevant to function of this field in db design.
How did you reset the seed? If table had dependent tables, should have used method for related tables described in https://support.microsoft.com/en-us/...alue-in-access